GrippeCanadaV3, Main, Exploration, bibRecord, 000159

Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.

Identifieur interne : 000159 ( Main/Exploration ); précédent : 000158; suivant : 000160

Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.

Auteurs : Wanhong Xu [Canada] ; Yohannes Berhane [Canada] ; Caroline Dubé [Canada] ; Binhua Liang [Canada] ; John Pasick [Canada] ; Gary Vandomselaar [Canada] ; Soren Alexandersen [Canada, Australie]

Source :

Scientific reports [ 2045-2322 ] ; 2016.

RBID : pubmed:27489095

Descripteurs français

KwdFr :
- Animaux, Animaux sauvages (virologie), Colombie-Britannique (épidémiologie), Dindons (virologie), Femelle, Fermes, Flambées de maladies (médecine vétérinaire), Grippe chez les oiseaux (transmission), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Génome viral (génétique), Maladies de la volaille (virologie), Maladies de la volaille (épidémiologie), Migration animale, Mâle, Phylogénie, Poulets (virologie), Sous-type H5N2 du virus de la grippe A (génétique), Sous-type H5N2 du virus de la grippe A (pathogénicité).
MESH :
- génétique : Génome viral, Sous-type H5N2 du virus de la grippe A.
- médecine vétérinaire : Flambées de maladies.
- pathogénicité : Sous-type H5N2 du virus de la grippe A.
- virologie : Animaux sauvages, Dindons, Grippe chez les oiseaux, Maladies de la volaille, Poulets.
- épidémiologie : Colombie-Britannique, Grippe chez les oiseaux, Maladies de la volaille.
- Animaux, Femelle, Fermes, Migration animale, Mâle, Phylogénie.

English descriptors

KwdEn :
- Animal Migration, Animals, Animals, Wild (virology), British Columbia (epidemiology), Chickens (virology), Disease Outbreaks (veterinary), Farms, Female, Genome, Viral (genetics), Influenza A Virus, H5N2 Subtype (genetics), Influenza A Virus, H5N2 Subtype (pathogenicity), Influenza in Birds (epidemiology), Influenza in Birds (transmission), Influenza in Birds (virology), Male, Phylogeny, Poultry Diseases (epidemiology), Poultry Diseases (virology), Turkeys (virology).
MESH :
- epidemiology : British Columbia, Influenza in Birds, Poultry Diseases.
- genetics : Genome, Viral, Influenza A Virus, H5N2 Subtype.
- pathogenicity : Influenza A Virus, H5N2 Subtype.
- transmission : Influenza in Birds.
- veterinary : Disease Outbreaks.
- virology : Animals, Wild, Chickens, Influenza in Birds, Poultry Diseases, Turkeys.
- Animal Migration, Animals, Farms, Female, Male, Phylogeny.

Abstract

The first North American outbreak of highly pathogenic avian influenza (HPAI) involving a virus of Eurasian A/goose/Guangdong/1/1996 (H5N1) lineage began in the Fraser Valley of British Columbia, Canada in late November 2014. A total of 11 commercial and 1 non-commercial (backyard) operations were infected before the outbreak was terminated. Control measures included movement restrictions that were placed on a total of 404 individual premises, 150 of which were located within a 3 km radius of an infected premise(s) (IP). A complete epidemiological investigation revealed that the source of this HPAI H5N2 virus for 4 of the commercial IPs and the single non-commercial IP likely involved indirect contact with wild birds. Three IPs were associated with the movement of birds or service providers and localized/environmental spread was suspected as the source of infection for the remaining 4 IPs. Viral phylogenies, as determined by Bayesian Inference and Maximum Likelihood methods, were used to validate the epidemiologically inferred transmission network. The phylogenetic clustering of concatenated viral genomes and the median-joining phylogenetic network of the viruses supported, for the most part, the transmission network that was inferred by the epidemiologic analysis.

DOI: 10.1038/srep30858
PubMed: 27489095

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Chickens (virology)</term>
<term>Disease Outbreaks (veterinary)</term>
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<front><div type="abstract" xml:lang="en">The first North American outbreak of highly pathogenic avian influenza (HPAI) involving a virus of Eurasian A/goose/Guangdong/1/1996 (H5N1) lineage began in the Fraser Valley of British Columbia, Canada in late November 2014. A total of 11 commercial and 1 non-commercial (backyard) operations were infected before the outbreak was terminated. Control measures included movement restrictions that were placed on a total of 404 individual premises, 150 of which were located within a 3 km radius of an infected premise(s) (IP). A complete epidemiological investigation revealed that the source of this HPAI H5N2 virus for 4 of the commercial IPs and the single non-commercial IP likely involved indirect contact with wild birds. Three IPs were associated with the movement of birds or service providers and localized/environmental spread was suspected as the source of infection for the remaining 4 IPs. Viral phylogenies, as determined by Bayesian Inference and Maximum Likelihood methods, were used to validate the epidemiologically inferred transmission network. The phylogenetic clustering of concatenated viral genomes and the median-joining phylogenetic network of the viruses supported, for the most part, the transmission network that was inferred by the epidemiologic analysis.</div>
</front>
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<DateCompleted><Year>2018</Year>
<Month>04</Month>
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<Month>08</Month>
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<Title>Scientific reports</Title>
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<ArticleTitle>Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.</ArticleTitle>
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<Abstract><AbstractText>The first North American outbreak of highly pathogenic avian influenza (HPAI) involving a virus of Eurasian A/goose/Guangdong/1/1996 (H5N1) lineage began in the Fraser Valley of British Columbia, Canada in late November 2014. A total of 11 commercial and 1 non-commercial (backyard) operations were infected before the outbreak was terminated. Control measures included movement restrictions that were placed on a total of 404 individual premises, 150 of which were located within a 3 km radius of an infected premise(s) (IP). A complete epidemiological investigation revealed that the source of this HPAI H5N2 virus for 4 of the commercial IPs and the single non-commercial IP likely involved indirect contact with wild birds. Three IPs were associated with the movement of birds or service providers and localized/environmental spread was suspected as the source of infection for the remaining 4 IPs. Viral phylogenies, as determined by Bayesian Inference and Maximum Likelihood methods, were used to validate the epidemiologically inferred transmission network. The phylogenetic clustering of concatenated viral genomes and the median-joining phylogenetic network of the viruses supported, for the most part, the transmission network that was inferred by the epidemiologic analysis.</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Wanhong</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba, R3E 3M4, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Berhane</LastName>
<ForeName>Yohannes</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba, R3E 3M4, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Dubé</LastName>
<ForeName>Caroline</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Canadian Food Inspection Agency, Animal Health Risk Assessment, Ottawa, Ontario, K1A 0Y9, Canada.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Liang</LastName>
<ForeName>Binhua</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Public Health Agency of Canada, National Microbiology Laboratory, Winnipeg, Manitoba, R3E 3M4, Canada.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Biochemistry and Medical Genetics, University of Manitoba, Winnipeg, Manitoba, R3E 3R2, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pasick</LastName>
<ForeName>John</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Canadian Food Inspection Agency, National Centre for Foreign Animal Disease, Winnipeg, Manitoba, R3E 3M4, Canada.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>VanDomselaar</LastName>
<ForeName>Gary</ForeName>
<Initials>G</Initials>
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Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.

Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.

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